Somatic
Germline

AI-Powered Insights

for Inherited Diseases.

Reduce turnaround times, minimize uncertainty.

Deliver life-changing diagnoses with confidence.

Extract HPO terms for streamlined phenotype analysis

Prioritize variants with AI-driven ranking to speed up expert review

Reassess variants automatically for real-time ClinVar updates⁠ with GenomeAlert!

Generate comprehensive clinical reports with all the insights you need at a glance

Diagnosing rare diseases is like finding a needle in a haystack—hidden among thousands of variants, the key to a patient’s diagnosis can be difficult to pinpoint.

Molecular labs work with remarkable accuracy to extract meaningful insights from NGS data, but the process can be time-consuming and complex. SeqOne’s AI-powered tools simplify NGS analysis, making data easier to interpret and accelerating the path to answers.

Book a demo

Comprehensive analysis in one platform.

Secondary

Singleton & Complex family structures
(up to 6 family members for the same price)

Supported providers

Tertiary

Panels

Whole Genome Sequencing

WES

Clinical Exome to Whole Exome Sequencing

WGS

Very small to very large panels

Quality

Power every analysis.

Discover our suite of Germline applications.

GermVar

Advanced bioinformatics for germline analysis from FASTQ files.

Supported Data

Panels (capture & amplicons), whole-exome & whole-genome

Variant Calling

SNVs, InDels, CNVs, Alu insertions, homopolymer regions

Quality Control

Coverage and contamination, ID check, kinship, etc.

Classification & Shortlist

SeqOne DiagAI quickly identifies disease causing variants

GermVar Family

Advanced bioinformatics for family analysis from FASTQ or VCF.
DiagAI Shortlist and accurate classification with de novo and heterozygous compound variants
Multi-member complex transmission analysis with heterogeneous phenotype mapping
AI-based carrier screening filter for genetic disease risk assessment
Up to 7 family members at no additional cost
Automated analysis creation with SeqOne Flow and PED files

GermVar Long-Read

Advanced bioinformatics for germline analysis from long read technologies.
Adaptive sampling and WGS workflow
Phased variants display, easily visualize haplotypes
Advanced structural variant visualization
Patented CFH/CFHR hybrid detection pipeline

Provider Compatibility

Oxford Nanopore Technologies, PacBio

GermVar Tertiary

Advanced bioinformatics for germline analysis from VCF files.
Easy VCF import for variants, CNVs, SVs, STRs
Compatible with Dragen, Epi2ME & custom workflows
Quality check including sex determination, kinship, Ti/Tv and hom-het ratios
Import variant database from previous interpretation software (classification, local frequency)
Local IGV support to visualize BAM files

GermVar Tertiary (aCGH)

Import CNV from aCGH analysis (included in GermVar Tertiary workset)
Support Agilent and ThermoFisher
Seamless transition from Alissa Interpret, same feature scope, import previous results
Bind with NGS analysis to extract Het comp variants
Support CNVs and LOH-neutral events
Annotations from : Clingen, DGV, GnomAD, DECIPHer...
Automatic ACMG Classification

More than a platform

Your lab, our commitment.

Every exome or genome sequencing case reveals 20,000–50,000 variants. Filtering down to the right candidate takes time—turning variant interpretation into a bottleneck. DiagAI changes that.

SeqOne’s AI-powered assistant accelerates rare disease diagnostics by ranking variants based on pathogenicity, phenotype relevance, and expert-curated rules.

Understand the Science Behind DiagAI. Download our White Paper.

Case study

How APHM Transformed Exome Sequencing with SeqOne

At APHM, one of France’s leading university hospitals, geneticists faced a growing challenge: too many variants, too little time. Their exome sequencing workflow was slow, manual, and overloaded, delaying critical diagnoses for patients with rare diseases.Enter SeqOne. By integrating AI-powered variant prioritization and automated workflows, APHM transformed its exome sequencing pipeline.

The result?

Faster turnaround times – from weeks to days

More confident diagnoses – AI-driven insights, expert-controlled decisions

Higher throughput – more cases processed  with the same resources

The automation of exome sequencing marks a pivotal moment for our laboratory. With SeqOne’s support, we’ve dramatically increased our sample analysis capacity and precision, significantly improving our ability to diagnose rare genetic diseases.

Read the full story

More than a platform.

Your lab, our commitment.

Built With You, Always Evolving.

Validate SeqOne with your own data, expert support, and zero commitment.

Transparent, Flexible Pricing

Pay-per-analysis with no hidden fees or volume constraints.

Personalized Support

Access field specialists, multi-lingual assistance and hands-on guidance.

Try it now